Friday, 13 February 2015

xe-NON-philia



The tetrahedral cage with Xenon inside it. Taken from (1).


The paper I want to share with you this time concerns a topic I am always fascinated with – Supramolecular Chemistry. We all know that organic chemistry is governed by covalent bonds, which in a sense hold the atoms together to give stable and interesting compounds. At the frontier of supramolecular chemistry, the forces are inter-molecular in nature. They are transient forces powerful enough to hold different molecules together. This has led to a lot of monumental achievements in the fields of nanotechnology, molecular recognition, sensor chemistry and so on.


A key concept in Supramolecular Chemistry is ‘sub-component assembly’. Imagine this concept as some sort of a molecular Lego Game. You have different chemical building blocks (termed the sub-components) and they form transient interactions which in turn hold them together to give a final structure. The final chemical structure is usually governed by thermodynamic factors, which means the pathway towards the final product is usually the one that gives the lowest energy state. It is possible to control the final result at will - for example, the inclusion of metal ions will lead to some metal-ligand interactions that can ‘narrow down’ the possible chemical pathways to the ones that are desirable. In this paper from Journal of American Chemical Society (JACS), this is indeed one of those cases. (1)


Telkki et. Al. has reported the synthesis of a chemical ‘cage’ – which means that certain chemical compounds can act as guests and reside inside this chemical structure. The shape of this cage is tetrahedral. Each of the 6 sides of the tetrahedron is made up from 2 simple chemical building blocks. Since there are heteroatoms (nitrogen in this case) on these 4 sides, they all have the potential to bond to a metal ion. And, the 4 vertices of the tetrahedron are Fe (II) ion. Thus the compound is self-assembled in an aqueous media (as the building blocks for the sides contain water-solubilizing groups) and this observation implies that the chemical properties of the ligands and the metal ions dictate the final course of the product formation.

Exotic aside, how can we use this chemical cage? The researchers have found that they can indeed encapsulate Xenon, a noble gas element. Since Xenon has a NMR-active isotope, therefore they can observe the difference in the chemical shifts when Xenon has been introduced into their system. Not only this can find use in NMR, the chemical cage can be used to ‘tame’ Xenon and allow the element to exhibit more controllable behavior, and this should contribute to chemical sensor technology. 


The novel cage from Sanders / Nitschke et. Al. Taken from (2).

Professors Sanders and Nitschke from Cambridge have also contributed tremendously to this field. They have a recent paper in Angew. Chem. , where they have made an interesting metallosupramolecular complex involving fullerene. (2) Check that out too if you are interested!

By Ed Law
13/2/2015


If you would like to explore more about the concept of molecular encapsulation, see:

Reference:

1. Encapsulation of Xenon by a Self-Assembled Fe4L6 Metallosupramolecular Cage.
J. Roukala, J. Zhu, C. Giri, K. Rissanen, P. Lantto, V.-V. Telkki, J. Am. Chem. Soc., Article ASAP. DOI: 10.1021/ja5130176, Publication Date (Web): February 5, 2015.

2. Guest-Induced Transformation of a Porphyrin-Edged FeII4L6 Capsule into a CuIFeII2L4 Fullerene Receptor.
D. M. Wood, W. Meng, T. K. Ronson, A. R. Stefankiewicz, J. K. M. Sanders and J. R. Nitschke, published online: 5 Feb 2015, DOI: 10.1002/anie.201411985.



Wednesday, 11 February 2015

Some Invaders (9/2/2015)

(Picture taken from http://www.cnb.csic.es/~meetinginvadosome/scientific-progamme.html.)


The concept of invadosomes in Molecular Cell Biology.


I am quite excited to hear about the concept of 'invadosome' in cell biology today. It is a set of spectacular cellular apparatus which acts as cell contacts when either some types of normal cells or tumor cells want to invade other cells, that is why it is important. The key component of the invadosome is related to its cytoskeletal machineries (in this case the F-Actin). When cellular signals, normal or nefarious, stimulate the corresponding cells, the assembly of F-actin takes place and the action is enhanced by a whole series of cytoskeletal proteins. Since focal adhesion is highly important for holding the cells together, it is not surprising at all to learn that focal adhesion kinase (FAK) will enhance the cytoskeletal action here. The completion of F-actin assembly will mobilize a whole series of extracellular matrix (ECM) - degradation machineries (such as metalloproteinases) - which will then chew up the web-like structure of the extracellular matrix. 

A personal observation from this insightful poster is that - the invadopodia (i.e. the bad guy which is related to cancer) is more 'sinister' than you bet. From the morphological diagrams, you can see that the structure of the invadopodia is far more angular and tight-knitted than the 'good guy' known as podosome. This appears to me that the invadopodia is 'ready to shoot', as an angular stance will provide a better focal adhesion strategy. This is indeed supported by the observations that these invadopodias are larger in size, they have longer persistence and have superior caliber in degrading ECM. Another fascinating question is - is there a dynamic equilibrium between the 2 types, i.e. can they interconvert? If the answer is yes, we will have to find out the conditions as this will be an important issue! A fascinating concept!

by Ed Law
9/2/2015

For the poster, please see:

Reference:

1. http://jcs.biologists.org/content/122/17/3009/F1.poster.jpg
2. http://www.cnb.csic.es/~meetinginvadosome/scientific-progamme.html


Historical Records

The first articles of my Science Blog from 2009 to 2011:

http://www.emockscience.blogspot.hk

It has been 4 years since I have written about science topics I am passionate about. Now one thing for sure - I'm back!

For those who are interested in cinema and creative writing, this is my other face:

http://www.emockedlaw.blogspot.hk

Enjoy!

Ed
11/2/2015